Identification of Rhizospheric Bacterial Diversity in Mangrove Ecosystems in Tanah Laut Regency
DOI:
10.29303/jbt.v26i2.11879Published:
2026-05-22Downloads
Abstract
Mangrove ecosystem is rich in rhizosphere bacteria that support the nutrient cycle and environmental balance. This study aims to identify the diversity of rhizosphere bacteria from mangrove soils in Tanah Laut Regency, South Kalimantan. Samples were taken from three types of mangrove density tight, medium, and rare, at depths of 0-30 cm and 30-60 cm. Tiered dilution to level 10-8, dilution level 10-5 to 10-8 are inoculated on NA media and purified. The purification results obtained a total of 29 isolats, in the dense mangrove type there were 14 isolats, medium mangroves 8 isolats, and rare mangroves 7 isolats. Morphological analysis showed macroscopic variation with round, entire, undulate, and irregular colony margins. There are white, yellow, beige, and orange colors. Elevation consists of flat, raised, to convex. The size of the colony is small to moderate. Microscopic analysis based on the results of gram staining there are groups with positive and negatif grams, in the form of coccus cells, bacillus, and coccobacillus. Growth assays on pH 3, 5, 7, and 9 indicated optimal growth at pH 7, with strong inhibition at pH 3. These results confirm that there is a high level of diversity of mangrove rhizosphere bacteria.
Keywords:
Bacterial Rhizosphere Bacterial Morphology Mangrove pH InfluenceReferences
Abna, I. M., Gita, P., Mahayasih, M. W., & Amir, M. (2020). Isolasi dan Karakterisasi Bakteri Tanah Di Kelurahan Kampung Melayu Jakarta Timur. Archives Pharmacia, 2(2), 102–111. https://doi.org/https://doi.org/10.47007/ap.v2i2.3393
Akhnah, A. M., Widyastuti, D. A., & Rachmawati, R. C. (2022). Identifikasi Genera Bakteri Coliform Pada Air Sungai Desa Datar Kabupaten Jepara. Quagga: Jurnal Pendidikan Dan Biologi, 14(2), 124–131. https://doi.org/10.25134/quagga.v14i2.5061
Alghamdi, A. K., Parween, S., Hirt, H., & Saad, M. M. (2024). Unveiling the bacterial diversity and potential of the Avicennia marina ecosystem for enhancing plant resilience to saline conditions. Environmental Microbiome, 19(1), 1–23. https://doi.org/10.1186/s40793-024-00642-w
Arifiani, R. N., & Lisdiana, L. (2021). Potensi Isolat Bakteri Endofit pada Akar Tanaman Jagung (Zea mays) Sebagai Penghasil Hormon Indole Acetic Acid. LenteraBio, 10(3), 285–291. https://doi.org/https://doi.org/10.26740/lenterabio.v10n3.p285-291
Aulia, F., Idrus, A. Al, & Rasmi, A. C. (2025). Isolation and Characterization of Cellulolytic Bacteria from Mangrove Leaf Litter in Bale Mangrove Ecosystem. Jurnal Biologi Tropis, 25(3), 4578–4588. https://doi.org/10.29303/jbt.v25i3.9940
Bahri, S., Ratnasari, R., Nurkhaeroni, U., & Mujitahid, M. (2022). Identification of Bacteria in Fresh Vegetables from The Traditional Market of Mataram City. Jurnal Biologi Tropis, 22(4), 1406–1413. https://doi.org/10.29303/jbt.v22i4.4445
Candrawati, T. H., Hasbi, N., & Rosyunita, R. (2025). Profile of Staphylococcus aureus Originating from Nasal Cavity Swabs of Food Handlers at the University of Mataram Canteen. Jurnal Biologi Tropis, 25(2), 1611–1622. https://doi.org/10.29303/jbt.v25i2.8742
Chauhan, P., Sharma, N., Tapwal, A., Kumar, A., Verma, G. S., Meena, M., Seth, C. S., & Swapnil, P. (2023). Soil Microbiome: Diversity, Benefits and Interactions with Plants. Sustainability (Switzerland), 15(14643), 1–43. https://doi.org/10.3390/su151914643
Chrisnawati, S. D., Sabdaningsih, A., Jati, O. E., & Ayuningrum, D. (2023). Isolasi dan Identifikasi Molekuler Bakteri Rhizosfer dari Sedimen Mangrove Jenis Rhizopora sp. di Ekosistem Mangrove Tapak, Semarang. Jurnal Kelautan: Indonesian Journal of Marine Science and Technology, 16(2), 117–124. https://doi.org/10.21107/jk.v16i2.15952
Cypionka, H., & Reese, J. O. (2021). Recording and Simulating Proton-Related Metabolism in Bacterial Cell Suspensions. Frontiers in Microbiology, 12, 1–10. https://doi.org/10.3389/fmicb.2021.654065
Euler, S., Jeffrey, L. C., Maher, D. T., Johnston, S. G., Sugimoto, R., & Tait, D. R. (2023). Methanogens limited to lower rhizosphere and to an atypical salt marsh niche along a pristine intertidal mangrove continuum. Limnology and Oceanography, 68(9), 2167–2182. https://doi.org/10.1002/lno.12414
Fadhila, Z. L., Sabdaningsih, A., Ayuningrum, D., & Jati, O. E. (2023). Isolation and Abundance of Mangrove Sediment Bacteria at Tirang Beach, Semarang. Jurnal Pasir Laut, 7(2), 60–67. https://doi.org/https://doi.org/10.14710/jpl.2023.58842
Fallo, G., Banusu, M. S., Pardosi, L., & Tefa, A. (2023). Isolasi Dan Identifikasi Bakteri Rhizosfer Dari Tanaman Kacang Gude (Cajanus cajan L) Sebagai Penghasil Hormon IAA (Indole Acetic Acid) dan Aplikasinya pada Benih Padi (Oryza sativa L). BERITA BIOLOGI, 22(1), 129–138. https://doi.org/10.14203/beritabiologi.v20i1.3991
Febriyantiningrum, K., Sriwulan, S., & Nurfitria, N. (2023). Karakterisasi Bakteri Rhizosfer Putri Malu (Mimosa pudica) yang Berpotensi sebagai Dekomposer dalam Pembuatan Biourin. Bioscientist : Jurnal Ilmiah Biologi, 11(2), 1239–1245. https://doi.org/10.33394/bioscientist.v11i2.8986
Fujikawa, T., Sasamoto, T., Zhao, F., Yamagishi, A., & Akanuma, S. (2023). Comparative analysis of reconstructed ancestral proteins with their extant counterparts suggests primitive life had an alkaline habitat. Research Square, 1–21. https://doi.org/10.21203/rs.3.rs-2964139/v1
Ganjanasiripong, P., Neesanant, P., Taechowisan, T., Kitkumthorn, N., & Chuenim, T. (2022). Bacterial Community of Klong Tub Mangrove Forest in Chonburi Province, Thailand. Environment and Natural Resources Journal, 20(6), 575–584. https://doi.org/10.32526/ennrj/20/202200058
Guan, N., & Liu, L. (2020). Microbial response to acid stress: mechanisms and applications. Applied Microbiology and Biotechnology, 104, 51–65. https://doi.org/10.1007/s00253-019-10226-1
Hamidah, M. N., Rianingsih, L., & Romadhon. (2019). Aktivitas Antibakteri Isolat Bakteri Asam Laktat Dari Peda Dengan Jenis Ikan Berbeda Terhadap E. coli dan S. aureus. Jurnal Ilmu Dan Teknologi Perikanan, 1(2), 11–21. https://doi.org/https://doi.org/10.14710/jitpi.2019.6742
Kartika, I. N., & Ibrahim, M. (2021). Efek Manipulasi pH pada Aktivitas Enzim Selulase Bakteri Bacillus subtillis Strain FNCC 0059 dalam Mendegradasi Selulosa. LenteraBio, 10(1), 51–57. https://doi.org/https://doi.org/10.26740/lenterabio.v10n1.p51-57
Lailatussyifa, A., Widyoroni, N., & Jati, O. E. (2020). Analisis Total Bakteri Vibrio sp. Di Sedimen Pada Kerapatan Mangrove Yang Berbeda Di Pantai Ujung Piring, Jepara. Pasir Laut, 4(1), 1–8. https://doi.org/https://doi.org/10.14710/jpl.2020.30518
Liao, S., Wang, Y., Liu, H., Fan, G., Sahu, S. K., Jin, T., Chen, J., Zhang, P., Gram, L., Strube, M. L., Shi, Q., Lee, S. M. Y., & Liu, X. (2020). Deciphering the Microbial Taxonomy and Functionality of Two Diverse Mangrove Ecosystems and Their Potential Abilities to Produce Bioactive Compounds. MSystems, 5(5), 1–19. https://doi.org/10.1128/msystems.00851-19
Ling, N., Wang, T., & Kuzyakov, Y. (2022). Rhizosphere bacteriome structure and functions. Nature Communications, 13(1). https://doi.org/10.1038/s41467-022-28448-9
Mahesh, P. P., Kolape, J., Sultana, H., & Neelakanta, G. (2025). McFarland Standards-Based Spectrophotometry Method for Calculating Approximate Multiplicity of Infection for an Obligate Intracellular Bacterium Anaplasma phagocytophilum. Microorganisms, 13(662), 1–13. https://doi.org/10.3390/microorganisms13030662
Maulani, A., Taufiq-SPJ, N., & Pratikto, I. (2021). Perubahan Lahan Mangrove di Pesisir Muara Gembong, Bekasi, Jawa Barat. Journal of Marine Research, 10(1), 55–63. https://doi.org/10.14710/jmr.v10i1.2839
Miljaković, D., Marinković, J., & Balešević-Tubić, S. (2020). The significance of bacillus spp. In disease suppression and growth promotion of field and vegetable crops. Microorganisms, 8(1037), 1–19. https://doi.org/10.3390/microorganisms8071037
Nimnoi, P., & Pongsilp, N. (2022). Insights into Bacterial Communities and Diversity of Mangrove Forest Soils along the Upper Gulf of Thailand in Response to Environmental Factors. Biology, 11(12). https://doi.org/10.3390/biology11121787
Oluoch, K. R., Muge, E. K., Onyango, M. O., & Mulaa, F. J. (2025). Phenotypic Characterization of Pectinase-Producing Alkaliphilic Microbial Isolats From Lake Bogoria, Baringo County, Kenya. MicrobiologyOpen, 14(5), 1–12. https://doi.org/10.1002/mbo3.70058
Park, I., Seo, Y. S., & Mannaa, M. (2023). Recruitment of the rhizo-microbiome army: assembly determinants and engineering of the rhizosphere microbiome as a key to unlocking plant potential. Frontiers in Microbiology, 14(1163832), 1–21. https://doi.org/10.3389/fmicb.2023.1163832
Sahiba, M., Suharli, L., & Mahdi, N. (2024). Isolasi dan Karakterisasi Bakteri pada Tanah Mangrove Rhizophora sp. di Labu Sawo Desa Penyaring Kabupaten Sumbawa. Journal of Life Science and Technology, 2(1), 7–13. https://jurnal.uts.ac.id/biomaras/article/view/3089/1770
Sari, I. N., Rahmatullah, R., Estiningtyas, R., & Mudrikah, S. (2024). Karakterisasi Bakteri Perakaran Vegetasi Kedelai, Singkong dan Rumput. Agriculture and Biological Technology (AGIOTECH), 2(1), 6–14. https://doi.org/https://doi.org/10.61761/agiotech.2.1.6-14
Sayuti, I., Zulfarina, Z., & Widodo, T. J. (2022). Influence of Potential Hydrogen (pH) on the Growth of Bacillus cereus IMB-11 during Hydrocarbon Degradation in vitro. JURNAL PEMBELAJARAN DAN BIOLOGI NUKLEUS, 8(3), 686–693. https://doi.org/10.36987/jpbn.v8i3.3230
Sohaib, M., Al-Barakah, F. N. I., M. Migdadi, H., & Alyousif, M. (2022). Isolation and Abundance of Different Culturable Microbes from Mangrove Environments in Coastal Areas of Saudi Arabia. International Journal of Current Microbiology and Applied Sciences, 11(4), 215–238. https://doi.org/10.20546/ijcmas.2022.1104.030
Sulistiyani, T. R., Kusmiati, M., & Putri, G. A. (2021). The 16S rRNA Analysis and Enzyme Screening of Bacillus from Rhizosphere Soil of Lombok Island. Jurnal Ilmu Pertanian Indonesia, 26(4), 582–590. https://doi.org/10.18343/jipi.26.4.582
Tkacz, A., Bestion, E., Bo, Z., Hortala, M., & Poole, P. S. (2020). Influence of plant fraction, soil, and plant species on microbiota: A multikingdom comparison. MBio, 11(1), 1–17. https://doi.org/10.1128/mBio.02785-19
Wang, J., Wu, H., Wu, L., Liu, Y., Letuma, P., Qin, X., Chen, T., Rensing, C., Lin, S., & Lin, W. (2021). Revealing Microbiome Structure and Assembly Process in Three Rhizocompartments of Achyranthes bidentata Under Continuous Monoculture Regimes. Frontiers in Microbiology, 12(677654), 1–14. https://doi.org/10.3389/fmicb.2021.677654
Waskitho, N. T., Nugrahini, A. F. H., Wahidiah, T., & Wibowo, F. A. C. (2023). Identifikasi Bakteri Metanotrof pada Hutan Mangrove dan Hutan Produksi di Desa Tambakrejo Kecamatan Sumbermanjing Wetan Kabupaten Malang. Journal of Forest Science Avicennia, 6(1), 85–97. https://doi.org/Doi:10.22219/avicennia.v6i1.25685
Yanti, D., Rahmawati, & Kurniatuhadi, R. (2021). Karakteristik Morfologis Dan Fisiologis Bakteri Endofit Dari Akar Napas Tumbuhan Avicennia marina (Forsk.) Vierh Di Mempawah Mangrove Park (Mmp). Biologica Samudra, 3(2), 166–183. https://doi.org/10.33059/jbs.v2i1.4220
Yusril, Muis, N., Wahid, M., & Sari, A. P. (2024). Keanekaragaman dan Potensi Bakteri Rhizosfer Penambat Nitrogen pada Tanaman Jewawut (Setaria italica L.) sebagai Kandidat Biofertilizer dalam Pertanian Berkelanjutan. IJEC Indonesian Journal of Ecology & Conservation, 1(2), 19-29. https://doi.org/10.31605/ijec.v1i2.6327
Zainab, R., Mujtaba Shah, G., Khan, W., Mehmood, A., Azad, R., Shahzad, K., Hussain Shah, Z., Alghabari, F., Sultan, T., & Chung, G. (2021). Efficiency of plant growth promoting bacteria for growth and yield enhancement of maize (Zea mays) isolatd from rock phosphate reserve area Hazara Khyber Pakhtunkhwa, Pakistan. Saudi Journal of Biological Sciences, 28(4), 2316–2322. https://doi.org/10.1016/j.sjbs.2021.01.02
Zega, A., Susanti, N. M., Tillah, R., Laoli, D., Telaumbanua, B. V., Zebua, R. D., Dawolo, J., Zebua, O., & Gea, A. S. A. (2024). Strategi Inovatif Dalam Menghadapi Degradasi Ekosistem: Kajian Terbaru Tentang Peran Vital Hutan Mangrove Dalam Konservasi Lingkungan. Zoologi: Jurnal Ilmu Peternakan, Ilmu Perikanan, Ilmu Kedokteran Hewan, 2(2), 71–83. https://doi.org/10.62951/zoologi.v2i2.65
Zulkifli, L., Sedijani, P., Citra Rasmi, D. A., & Amrullah, L. W. Z. (2020). Screening and Molecular Identification of Phosphate-Solubilizing Rhizobacteria from Mangrove Ecosystem of the Lombok Island. Jurnal Biologi Tropis, 20(3), 475–484. https://doi.org/10.29303/jbt.v20i3.1730
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