Culturable Microbial Abundance and Morphotypes in Stingless Bee Honey from Urban and Rural Landscapes
DOI:
10.29303/jbt.v26i3.12128Published:
2026-07-15Downloads
Abstract
Stingless bee honey contains culturable microorganisms that may vary with floral resources, hive conditions, handling, and surrounding landscapes. This descriptive study compared total culturable counts and colony/cell morphotypes in Heterotrigona itama honey collected from one urban site in Pontianak and one rural site in Ambawang, Kubu Raya. Honey was serially diluted, cultured on Glucose Peptone Agar, and characterized using colony morphology, Gram staining, and endospore observations. Total Plate Count (TPC) values varied among isolates within each landscape: urban isolates ranged from 1.98 × 105 to 1.12 × 106 CFU/mL, while rural isolates ranged from 8.9 × 104 to 2.2 × 105 CFU/mL. Urban cultures included bacterial and yeast-like morphotypes, whereas rural cultures were represented by Gram-positive, non-spore-forming bacterial morphotypes. These observations describe culturable abundance and morphology but do not establish taxonomic identity, community diversity, or a causal landscape effect because site replication, molecular identification, physicochemical covariates, and inferential statistics were not reported. The study provides preliminary data that can guide replicated surveys combining culture-based and sequencing approaches.
Keywords:
Culturable Microorganisms Heterotrigona itama Honey Microbiology Total Plate Count Urban-Rural LandscapeReferences
Avila, S., Beux, M. R., Ribani, R. H., & Zambiazi, R. C. (2018). Stingless bee honey: Quality parameters, bioactive compounds, health-promotion properties and modification detection strategies. Trends in Food Science & Technology, 81, 37–50. DOI:10.1016/j.tifs.2018.09.002
Azmi, W. A., Sembok, W. Z. W., Nasaruddin, S. N. M., Azli, N. S., Hatta, M. F. M., & Muhammad, T. N. T. (2022). Evaluation of native stingless bee species (Heterotrigona itama and Geniotrigona thoracica) for pollination efficiency on Melon Manis Terengganu. Malaysian Applied Biology, 51(5). https://doi.org/10.55230/mabjournal.v51i5.2360
Bero, C. D. R. I., Sanam, M. U. E., & Wuri, D. A. (2023). Kuantifikasi mikroorganisme dan kelayakan konsumsi madu lokal yang diperjualbelikan di Kabupaten TTS (Timor Tengah Selatan). Jurnal Kajian Veteriner, 11(2), 114–124. DOI:https://doi.org/10.35508/jkv.v11i2.7557
Biscassi, G. F., Rabêlo, W. F., Sardeli, R., Rodrigues, G. G. R., Brigante, J., Daam, M. A., et al. (2024). Residual determination and acute toxicity of the neonicotinoid clothianidin in the neotropical stingless bee Tetragonisca angustula Latreille, 1811 (Apidae: Meliponini). Chemosphere, 349, 140878. https://doi.org/10.1016/j.chemosphere.2023.140878
Buchori, D., Rizali, A., Priawandiputra, W., Raffiudin, R., Sartiami, D., Pujiastuti, Y., Jauharlina, Mahardika G. P., Meilin, A., Leatemia, J. A., Sudiarta, I. P., Rustam, R., Nelly, N., Lestari, P., Syahputra, E., Hasriyanti, Watung, J. F., Daud, I. D. A., Hariani, N., Jihadi, A., & Johannis, M.(2022). Beekeeping and managed bee diversity in Indonesia: Perspective and preference of beekeepers. Diversity, 14(1), 52. https://doi.org/10.3390/d14010052
Castillo, D.C. et al. (2024) “Distinct fungal microbiomes of two Thai commercial stingless bee species , Lepidotrigona terminata and Tetragonula pagdeni suggest a possible niche separation in a shared habitat,” (February), pp. 1–9. Available at: https://doi.org/10.3389/fcimb.2024.1367010.
Cerqueira, A. E. S. C., Lima, H. S., Silva, L. C. F., Veloso, T. G. R., de Paula, S. O., Santana, W. C., & Silva, C. C. (2024). Melipona stingless bees and honey microbiota reveal the diversity, composition, and modes of symbionts transmission. FEMS Microbiology Ecology, 100(7), fiae063. https://doi.org/10.1093/femsec/fiae063
da Silva, R. N. A., Magalhães-Guedes, K. T., de Souza, C. O., de Oliveira Alves, R. M., & Umsza-Guez, M. A. (2024). Microbiological and physical-chemical characteristics of pollen and honey from stingless bees: A review. Food Production, Processing and Nutrition, 6(1). https://doi.org/10.1186/s43014-024-00268-y
Echeverrigaray, S., Scariot, F. J., Foresti, L., Schwarz, L. V., Rocha, M., Priscila, G., Moreira, J. P., Paula, A., & Delamare, L. (2021). International Journal of Food Microbiology Yeast biodiversity in honey produced by stingless bees raised in the highlands of southern Brazil. 347(January). https://doi.org/10.1016/j.ijfoodmicro.2021.109200
Evahelda, I., Setiawan, S. N. A., & Afriani, Z. L. (2021). Chemical characteristics of kelulut honey (Trigona sp.) in Bangka Tengah District, Indonesia. IOP Conference Series: Earth and Environmental Science, 694(1), 012072. doi:10.1088/1755-1315/694/1/012072
Fatma, I.I., Nuraida, L. and Faridah, D.N. (2022) “Probiotic Potential of Lactic Acid Bacteria from Honey of Three Different Type Honeybees,” Jurnal Teknologi dan Industri Pangan, 33(2), pp. 189–199. Available at: https://doi.org/10.6066/jtip.2022.33.2.189.
Goh, W., Molujin, A. M., Muthu, K., Sabullah, M. K., Azifa, A., Faik, M., & Azlan, J. (2021). Isolation and characterization of lactic acid bacteria from Sabah ( North Borneo ) stingless bees for probiotic and food applications. International Journal of Food Properties, 24(1), 564–578. https://doi.org/10.1080/10942912.2021.1900238
Hartono, Y., Syafruddin, S., & Taqwa, W. H. (2025). Forest honey diversity and potential for honey-based agrotourism in Sumbawa Regency. Journal of Biology, Environment, and Edu-Tourism, 1(2), 82–87. https://journals.widhatulfaeha.id/index.php/jbee/article/view/93
Hashim, K. and Chin, K. (2023) “The Mechanism of Kelulut Honey in Reversing Metabolic Changes in Rats Fed with High-Carbohydrate High-Fat Diet,” molecules, 28, p. 22. Available at: https://doi.org/https:// doi.org/10.3390/molecules28062790.
Luca, L., Pauliuc, D., Ursachi, F., & Oroian, M. (2025). Physicochemical parameters, microbiological quality, and antibacterial activity of honey from the Bucovina region of Romania. Scientific Reports, 15(1), 1–21. DOI:10.1038/s41598-025-88613-0
Mokoena, M. P. (2017). Lactic acid bacteria and their bacteriocins: Classification, biosynthesis and applications against uropathogens: A mini-review. Molecules, 22(8). doi:10.3390/molecules22081255
Nemo, R. and Bacha, K. (2021) “Microbial quality, physicochemical characteristics, proximate analysis, and antimicrobial activities of honey from Anfilo district,” Food Bioscience, 42. Available at: https://doi.org/10.1016/j.fbio.2021.101132.
Ngalimat, M. S., Noor, R., & Raja, Z. (2019). Characterisation of bacteria isolated from the stingless bee , Heterotrigona itama , honey , bee bread and propolis. 1–20. https://doi.org/10.7717/peerj.7478
Nguyen, P.N. Rehan, S. M., Emanuel, A., & Cerqueira, S. (2022) “The effects of urban land use gradients on wild bee microbiomes,” Frontiers in Microbiology, (November), pp. 1–15. Available at: https://doi.org/10.3389/fmicb.2022.992660.
Nurmiati, N., Herwina, H. and Periadnadi, P. (2024) “Exploration of natural microflora from stingless bee honey harvested from Limau Manis area , Padang , West Sumatra , Indonesia,” 25(9), pp. 2908–2916. Available at: https://doi.org/10.13057/biodiv/d250910.
Rosli, F.N. et al. (2020) “Stingless bee honey: Evaluating its antibacterial activity and bacterial diversity,” Insects, 11(8), pp. 1–13. Available at: https://doi.org/10.3390/insects1108050.
Samsudin, A., Jamian, S., Shilan, T., & Syukri, M. (2024). The foraging behavior of Heterotrigona itama (Cockerell) (Hymenoptera: Apidae: Meliponini) in close system rockmelon (Cucurbitales: Cucurbitaceae) cultivation. Serangga, 29(3). https://doi.org/10.17576/serangga-2024-2903-03
Setiaji, A., Annisa, R.R.R. and Rahmandhias, D.T. (2023) “Bakteri Bacillus Sebagai Agen Kontrol Hayati dan Biostimulan Tanaman,” Rekayasa, 16(1), pp. 96–106. Available at: https://doi.org/10.21107/rekayasa.v16i1.17207.
Shi, H., Ratering, S., Schneider, B., & Schnell, S. (2025). Microbiome of honey bee corbicular pollen: Factors influencing its structure and potential for studying pathogen transmission. Science of the Total Environment, 958, 178107. https://doi.org/10.1016/j.scitotenv.2024.178107
Xiong, Z.R., Sogin, J.H. and Worobo, R.W. (2023) “Microbiome analysis of raw honey reveals important factors influencing the bacterial and fungal communities,” (January), pp. 1–14. Available at: https://doi.org/10.3389/fmicb.2022.1099522.
License
Copyright (c) 2026 Fitriyan Kurnia, Elpe Bibas, Muftiah Yasi Dwi Wahyuni, Etha Marista, Adityo Raynaldo, Nur Exsanty Rembulan, Jani Putri Rara, Riza Linda

This work is licensed under a Creative Commons Attribution 4.0 International License.

Jurnal Biologi Tropis is licensed under a Creative Commons Attribution 4.0 International License.
The copyright of the received article shall be assigned to the author as the owner of the paper. The intended copyright includes the right to publish the article in various forms (including reprints). The journal maintains the publishing rights to the published articles.
Authors are permitted to disseminate published articles by sharing the link/DOI of the article at the journal. Authors are allowed to use their articles for any legal purposes deemed necessary without written permission from the journal with an acknowledgment of initial publication to this journal.























