Molecular and Phylogenetic Character Analysis of Tuna (Auxis rochei) Based on the CO1 Gene in the Waters of West Lombok
Authors
Rizky Ferdyanto Darmawan , H. Mahrus , Syamsul Bahri , Lalu ZulkifliDOI:
10.29303/jbt.v24i2.6768Published:
2024-05-06Issue:
Vol. 24 No. 2 (2024): April - JuniKeywords:
Gene CO1, tuna fish, phylogenetic, molecular.Articles
Downloads
How to Cite
Downloads
Metrics
Abstract
Tuna Fish is a type of tuna with a medium body size and fair wide distribution in Indo-Pacific waters. The number of Tuna Fish species that have morphological similarities can cause misidentification. This study aims to determine the genetic and phylogenetic diversity between variations of Tuna Fish species in the West Lombok Waters. This research is an exploratory study with the object of research being a dataset of ingroup sequences of tuna and outgroup sequences from the same family. The amplification of fish samples used DNA primers targeting the CO1 gene, which resulted in a sequence length of approximately 650 bp. Sequence data were analyzed using MEGA XI software known from phylogenetic tree analysis shows that Tuna Fish from the waters of the West Lombok are closely related to Tuna Fish from the South China Sea and have a genetic distance of less than 3%.
References
Akhsani, F., Hamidy, A., Farajallah, A., & Smith, E. N. (2019). Hubungan Filogenetik Phrynella pulchra Boulenger, 1887 Berdasarkan Gen 16S rRNA. Zoo Indonesia, 26(2). https://doi.org/10.52508/zi.v26i2.3721
Alamsyah, N., Iqbal, TH, Damora, A., Batubara, AS, & Muchlisin, ZA (2020). Morphometric variations of gray mackerel (Thunnus tonggol) in Aceh sea waters. Unsyiah Marine Fisheries Student Scientific Journal , 5 (1). ISSN: 2527-6395
Ardelia, V., Vitner, Y., & Boer, M. (2016). Biologi reproduksi ikan tongkol Euthynnus affinis di perairan Selat Sunda. Jurnal Ilmu dan Teknologi Kelautan Tropis, 8(2), 689-700. https://doi.org/10.29244/jitkt.v8i2.15835
Ardelia, V., Vitner, Y., & Boer, M. (2016). Reproductive Biology of Eastern Little Tuna Euthynnus affinis in the Sunda Strait. Journal of Tropical Marine Science and Technology , 8 (2), 689-700. https://doi.org/10.29244/jitkt.v8i2.15835
Ardiana, S. A., Astarini, I. A., Putra, I. N. G., Pertiwi, P. D., Sembiring, A., Yusmalinda, A., & Al Malik, D. (2020). Keragaman Genetik dan Filogenetik Longtail Tuna (Thunnus tonggol) yang Didaratkan di Pasar Ikan Pabean, Surabaya. Musamus Fisheries and Marine Journal: 107-115. Doi: 0.35724/mfmj. v3i2.3375
Beivy, K. J. (2020). Variasi sekuens gen CO1 untuk DNA barcoding ikan tuna. Media Teknologi Hasil Perikanan, 8(2), 70-75. https://doi.org/10.35800/mthp.8.2.2020.28378
Dailami, M., Saleky, D., Toha, A. H. A., & Agamawan, L. P. I. (2022). Identifikasi Genetik Udang Mantis Dengan Pendekatan DNA Barcoding Gen Sitokrom Oksidase 1(CO1). ACROPORA J. Ilmu Kelaut. dan Perikan. Papua, 5. DOI:10.31957/ acr.v5i1.2269
Devy, Suryany., Astarani, I, A., Putra, I, N, G., et al. "Keragaman Genetik Ikan Tongkol Abu-Abu (Thunnus tonggol) yang Didaratkan di Pasar Ikan Sagulung, Batam, Kepulauan Riau Berdasarkan DNA Mitokondria." Journal of Marine and Aquatic Sciences 7.2 (2021): 176-183. https://doi.org/10.24843/jmas.2021.v07.i02.p06
Dharmayanti, N. L. P. I. (2011). Filogenetika molekuler: metode taksonomi organisme berdasarkan sejarah evolusi. Wartazoa, 21(1), 1-10.
Fernandeza, P. H., Dharma, I. S., Putraa, I. N. G., Sembiring, A., Yusmalindab, A., Al Malik, D., & Pertiwi, P. D. Analisis Filogenetik Ikan Tuna (Thunnus spp.) yang didaratkan di Pelabuhan Benoa, Bali. Journal of Marine Research and Technology 4(2):37. DOI:10.24843/JMRT.2021.v04.i02.p06
Fietri, W. A., Rasak, A., & Ahda, Y. (2021). Analisis Filogenetik Ikan Tuna (Thunnus spp) di Perairan Maluku Utara Menggunakan COI (Cytocrome Oxydase I). BIOMA: Jurnal Biologi Makassar, 6(2), 31-39. https://doi.org/10.20956/bioma.v6i2.14053
Giulia, Guerriero., Dea, R., Magdy, A, A., et al. "Fisheries and biodiversity along Mediterranean Sea: Italian and Egyptian coast overview." Euro-Mediterranean Journal for Environmental Integration 2 (2017): 1-14. https://doi.org/10.1007/s41207-017-0027-8
Hall, B. G. (2013). Building phylogenetic trees from molecular data with MEGA. Molecular biology and evolution, 30(5), 1229-1235. https://doi.org/10.1093/molbev/mst012
Isti'anah, I., & Maulana, R. (2020, June). Morphological Characterization of Komo Tuna Fish (Euthynnus affinis) Landed at the Fish Market in Southeast Maluku Regency and Tual City. In Proceedings of the National Seminar on Biology, Technology and Education (Vol. 8, No. 1). http://dx.doi.org/10.22373/pbio.v8i2.9651
Jamal, M. (2022). Karakteristik Biologis Ikan Tongkol (Euthynnus Affinis) Hasil Tangkapan Purse Seine di Perairan Herlang Teluk Bone, Indonesia. Marine Fisheries, 13(1), 113-122. https://doi.org/10.29244/jmf.v13i1.37825
Kuswanto, TD, & Syamsuddin, ML (2017). The relationship between sea surface temperature and chlorophyll-a on tuna catch in Lampung Bay. Journal of Marine Fisheries , 8 (2). ISSN : 2088-3137
Mahrus, H., Syukur, A., & Zulkifli, L. (2022). Morphological and molecular characters of Lemuru fish (Sardinella lemuru) from Tanjung Luar Waters, East Lombok. Jurnal Biologi Tropis, 22(4), 1474-1482. https://doi.org/10.29303/jbt.v22i4.4555
MARTIANSYAH, I., PUTRANTO, R. A., & KHUMAIDA, N. (2017). Identifikasi famili gen putatif penyandi protease inhibitor dengan pendekatan in silico komparatif pada genom Hevea brasiliensis Muell. Arg (Identification of putative gene family encoding protease inhibitors by in silico comparative analysis in Hevea brasiliensis Muell. Arg genome). Menara Perkebunan, 85(2). https://doi.org/10.22302/iribb.jur.mp.v85i2.257
Meilana, L., Wardiatno, Y., Butet, N. A., & Krisanti, M. (2016). Karakter morfologi dan identifikasi molekuler dengan marka gen CO1 pada mimi (Tachypleus gigas) di perairan utara Pulau Jawa. Jurnal Ilmu dan Teknologi Kelautan Tropis, 8(1), 145-158. https://doi.org/10.29244/jitkt.v8i1.12651
Nofitasari, C, A., and Pungky, S, W, K., (2022). Komposisi Isi Lambung Ikan Tongkol Komo (Euthynnus affinis). Scopindo Media Pustaka. ISBN 6233653452, 9786233653459
Nuryanto, A., & Solihin, D. D. (2006). Variasi sekuens gen mitokondrial sitokrom c oksidase I dari siput lola (Trochus niloticus). Majalah Ilmiah Biologi BIOSFERA: A Scientific Journal, 23(1), 31-37. https://doi.org/10.20884/1.mib.2006.23.1.143
Peja, E., Leonna, A., Athallah, M. T., Adawiyah, R. A., & Nofiyanti, F. (2022). Pengolahan Ikan Lokal Melalui Inovasi Curing Dengan Squid, Vanilla Salt, Dan Isomalt. Jurnal Pengolahan Pangan, 7(1), 1-6. Doi:10.31970/pangan.v7i1.60.
Permadi, J., Rochvita, A., Anggraini, R. C. P. K., & Palimirmo, F. S. (2022). Filogenetik Ikan Ekstremofil Edible Populasi Magelang Menggunakan Gen Cytochrome Oxydase I. Journal of Research and Technology, 8(1), 87-98. https://doi.org/10.55732/jrt.v8i1.507
Sugara, A., Anggraini, S., Wulandari, Y., Suryanita, A., & Anggoro, A. (2022). Potential Resources of Tuna Fish (Euthynnus sp.) in Purse Seine Fishing Equipment at Sibolga Nusantara Water Port. Journal of the Equatorial Ocean , 5 (1), 25-30. DOI:10.26418/lkuntan.v5i1.52435
Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: molecular evolutionary genetics analysis version 11. Molecular biology and evolution, 38(7), 3022-3027. https://doi.org/10.1093/molbev/msab120
Yuliana, E., Yani, D. E., & Agustina, S. (2020). Pengelolaan Perikanan Tongkol Lisong (Auxis rochei) Di Kawasan Konservasi Perairan Nusa Penida, Bali. Jurnal Ilmu dan Teknologi Kelautan Tropis, 12(3), 659-672. https://doi.org/10.29244/jitkt.v12i3.32195
Zein, M. S. A. (2018). Barkoding DNA burung Elang (Famili Accipitridae) di Indonesia. Berita Biologi, 17(2), 165-173. https://doi.org/10.14203/beritabiologi.v17i2.3108
License
Copyright (c) 2024 Rizky Ferdyanto Darmawan, H. Mahrus, Syamsul Bahri, Lalu Zulkifli
This work is licensed under a Creative Commons Attribution 4.0 International License.
Jurnal Biologi Tropis is licensed under a Creative Commons Attribution 4.0 International License.
The copyright of the received article shall be assigned to the author as the owner of the paper. The intended copyright includes the right to publish the article in various forms (including reprints). The journal maintains the publishing rights to the published articles.
Authors are permitted to disseminate published articles by sharing the link/DOI of the article at the journal. Authors are allowed to use their articles for any legal purposes deemed necessary without written permission from the journal with an acknowledgment of initial publication to this journal.