Predictive Modeling of Thermal Stability in Zn-MOF Using Multilayer Perceptron
DOI:
10.29303/jpft.v12i1.11342Published:
2026-05-30Downloads
Abstract
Indonesia's heavy reliance on fossil fuels, which account for approximately 80% of its national energy supply, poses a significant obstacle to achieving Net Zero Emissions (NZE) by 2060. Metal-Organic Frameworks (MOF) have emerged as promising innovative materials for sustainable energy applications; however, their limited thermal stability at elevated temperatures remains a major challenge. This study aims to develop a Multilayer Perceptron (MLP -based predictive model for the thermal stability of zinc-based MOF (Zn-MOF) using four structural descriptors nZn, nN, Lig, and Het derived from a dataset of 151 Zn-MOF compounds. Three hidden-layer configurations with 3, 6, and 9 neurons were evaluated using 10-fold cross-validation and three regression metrics: Mean Absolute Error (MAE), Root Mean Squared Error (RMSE), and the coefficient of determination (R²). The 9-neuron configuration achieved the highest predictive accuracy, with MAE = 0.0020, RMSE = 0.0022, and R² = 0.9991. SHAP analysis identified nN and Het as the most influential descriptors for thermal stability prediction. These results demonstrate that the MLP architecture effectively captures nonlinear structure–property relationships in Zn-MOFs, offering a computationally efficient tool to accelerate the design of thermally stable materials for sustainable energy applications.
Keywords:
Metal-Organic Frameworks (MOF) Thermal stability (TS) Multilayer Perceptron (MLP)References
Adelia, D., Fitri, Z., & Agusniar, C. (2025). Herbal And Poisonous Leaf Detection Using Convolutional Neural Network For Herbal And Poisonous Plant Classification. Rabit : Jurnal Teknologi Dan Sistem Informasi Univrab, 10(2), 204–216. https://doi.org/10.36341/RABIT.V10I2.6025
Akrom, M., Al Azies, H., Herowati, W., Sutojo, T., Rustad, S., Dipojono, H. K., & Kasai, H. (2025). SMILES-driven machine learning for high-throughput investigation of anti-corrosion materials. Chemometrics and Intelligent Laboratory Systems, 263, 105441. https://doi.org/10.1016/J.CHEMOLAB.2025.105441
Arifuddin, D., Kusrini, K., & Kusnawi, K. (2025). Perbandingan Performansi Algoritma Multiple Linear Regression dan Multi Layer Perceptron Neural Network dalam Memprediksi Penjualan Obat. MALCOM: Indonesian Journal of Machine Learning and Computer Science, 5(2), 722–737. https://doi.org/10.57152/malcom.v5i2.1952
Ariyanto, N., Azies, H. Al, & Akrom, M. (2024). Ensemble Stacking of Machine Learning Approach for Predicting Corrosion Inhibitor Performance of Pyridazine Compounds. International Journal of Advances in Data and Information Systems, 5(2). https://doi.org/10.59395/ijadis.v5i2.1346
Azies, H. Al, Akrom, M., Rustad, S., & Dipojono, H. K. (2024). Robust Machine Learning for Predicting Thermal Stability of Metal-Organic Framework. Chemistry Africa, 7(8), 4669–4681. https://doi.org/10.1007/s42250-024-01080-4
Azies, H. Al, Ariyanto, N., & Dikaputra, I. B. (2024). Data-Driven Analytical Model Using Machine Learning Algorithms: A Case Study on Clean and Healthy Living Behaviour in Surabaya City’s Coastal Areas. International Journal of Advances in Data and Information Systems, 5(1), 1–11. https://doi.org/10.59395/IJADIS.V5I1.1309.
Bertinetto, C., Engel, J., & Jansen, J. (2020). ANOVA simultaneous component analysis: A tutorial review. Analytica Chimica Acta: X, 6, 100061. https://doi.org/10.1016/J.ACAX.2020.100061
Budi, S., Akrom, M., Azies, H. Al, Sudibyo, U., Sutojo, T., Trisnapradika, G. A., Safitri, A. N., Pertiwi, A., & Rustad, S. (2024). Implementation of Polynomial Functions to Improve the Accuracy of Machine Learning Models in Predicting the Corrosion Inhibition Efficiency of Pyridine-Quinoline Compounds as Corrosion Inhibitors. KnE Engineering, 78-87–78–87. https://doi.org/10.18502/KEG.V6I1.15351
Chicco, D., Warrens, M. J., & Jurman, G. (2021). The coefficient of determination R-squared is more informative than SMAPE, MAE, MAPE, MSE and RMSE in regression analysis evaluation. PeerJ Computer Science, 7, 1–24. https://doi.org/10.7717/PEERJ-CS.623/SUPP-1
Diallo, R., Edalo, C., & Awe, O. O. (2025). Machine Learning Evaluation of Imbalanced Health Data: A Comparative Analysis of Balanced Accuracy, MCC, and F1 Score. STEAM-H: Science, Technology, Engineering, Agriculture, Mathematics and Health, Part F4005, 283–312. https://doi.org/10.1007/978-3-031-72215-8_12
Elviana, A., Rosmaini, E., & Nababan, E. S. M. (2024). A Mixed-Integer Programming Approach on Clustering Problems with Segmentation Application Customer. Sinkron, 8(4), 2281–2286. https://doi.org/10.33395/sinkron.v8i4.14141
Fikriah, F. K., Ariyanto, A. D. P., & Setyawan, A. F. (2024). Klasifikasi Hasil Mri Tumor Otak Dengan Ektraksi Fitur Gray Level Co-Occurance Matrix (GLCM). Rabit : Jurnal Teknologi Dan Sistem Informasi Univrab, 9(2), 343–350. https://doi.org/10.36341/RABIT.V9I2.4793
Garlits, J., McAfee, S., Taylor, J. A., Shum, E., Yang, Q., Nunez, E., Kameron, K., Fenech, K., Rodriguez, J., Torri, A., Chen, J., Sumner, G., & Partridge, M. A. (2023). Statistical Approaches for Establishing Appropriate Immunogenicity Assay Cut Points: Impact of Sample Distribution, Sample Size, and Outlier Removal. The AAPS Journal 2023 25:3, 25(3), 37-. https://doi.org/10.1208/S12248-023-00806-5
Healy, C., Patil, K. M., Wilson, B. H., Hermanspahn, L., Harvey-Reid, N. C., Howard, B. I., Kleinjan, C., Kolien, J., Payet, F., Telfer, S. G., Kruger, P. E., & Bennett, T. D. (2020). The thermal stability of metal-organic frameworks. In Coordination Chemistry Reviews (Vol. 419). Elsevier B.V. https://doi.org/10.1016/j.ccr.2020.213388
Hodson, T. O. (2022). Root-mean-square error (RMSE) or mean absolute error (MAE): when to use them or not. In Geoscientific Model Development (Vol. 15, Issue 14, pp. 5481–5487). Copernicus GmbH. https://doi.org/10.5194/gmd-15-5481-2022
Liu, Q., & Wang, L. (2021). t-Test and ANOVA for data with ceiling and/or floor effects. Behavior Research Methods, 53(1), 264–277. https://doi.org/10.3758/S13428-020-01407-2/TABLES/7
Maheswari, S., & Gunawan, D. (2025). Deteksi Dini Kanker Kulit Menggunakan CNN, DNN, Dan Efficientnet: Pendekatan Deep Learning Berbasis Web. Rabit : Jurnal Teknologi Dan Sistem Informasi Univrab, 10(2), 932–944. https://doi.org/10.36341/RABIT.V10I2.6417
Malonzo, C. D., Shaker, S. M., Ren, L., Prinslow, S. D., Platero-Prats, A. E., Gallington, L. C., Borycz, J., Thompson, A. B., Wang, T. C., Farha, O. K., Hupp, J. T., Lu, C. C., Chapman, K. W., Myers, J. C., Penn, R. L., Gagliardi, L., Tsapatsis, M., & Stein, A. (2016). Thermal Stabilization of Metal-Organic Framework-Derived Single-Site Catalytic Clusters through Nanocasting. Journal of the American Chemical Society, 138(8), 2739–2748. https://doi.org/10.1021/jacs.5b12688
Moharramnejad, M., Tayebi, L., Akbarzadeh, A. R., & Maleki, A. (2022). A simple, robust, and efficient structural model to predict thermal stability of zinc metal-organic frameworks (Zn-MOFs): The QSPR approach. Microporous and Mesoporous Materials, 336. https://doi.org/10.1016/j.micromeso.2022.111815
Nabila, H. A., & Endang Wahyu Pamungkas. (2025). Perbandingan Algoritma Machine Learning: Svm, Random Forest, Dan Xgboost Untuk Prediksi Stroke. Rabit : Jurnal Teknologi Dan Sistem Informasi Univrab, 10(2), 1098–1110. https://doi.org/10.36341/rabit.v10i2.6444
Nuraeni, F., Kurniadi, D., & Diazki, M. H. (2024). Algoritma K-Nearest Neighbor pada Kasus Dataset Imbalanced untuk Klasifikasi Kinerja Karyawan Perusahaan. Jurnal Teknologi Informasi Dan Ilmu Komputer, 11(3), 557–568. https://doi.org/10.25126/jtiik.938144
Park, J., Kim, H., Kang, Y., Lim, Y., & Kim, J. (2024). From Data to Discovery: Recent Trends of Machine Learning in Metal-Organic Frameworks. In JACS Au (Vol. 4, Issue 10, pp. 3727–3743). American Chemical Society. https://doi.org/10.1021/jacsau.4c00618
Pratama, A. S., Umam, T., Irnanda, M. D., Nugroho, D. P., & Azies, H. Al. (2025). Integration of Ensemble Stacking in Machine Learning for Thermal Stability Prediction of Metal-Organic Frameworks (MOF). Sainsmat : Jurnal Ilmiah Ilmu Pengetahuan Alam, 14(2), 241. https://doi.org/10.35580/sainsmat142759682025
Prayuda, A., & Pratama, I. (2024). Prediksi Jumlah Kedatangan Wisatawan Mancanegara Di Indonesia Berdasarkan Pintu Masuk Kedatangan Udara. Rabit : Jurnal Teknologi Dan Sistem Informasi Univrab, 9(2), 232–241. https://doi.org/10.36341/rabit.v9i2.4787
Rahman, I. F., Al Azies, H., & Akrom, M. (2025). Deteksi Struktur Material Perovskit ABO3 Berbasis Machine Learning. 9, 2025. https://doi.org/10.47002/metik.v9i1.1036
Saputra, E., Susanto, E. R., & Kunci, K. (2025). Implementation of Deep Learning with Multilayer Perceptron (MLP) for Heart Disease Prediction Using the SMOTE-ENN Technique. In Journal of Applied Informatics and Computing (JAIC) (Vol. 9, Issue 3). http://jurnal.polibatam.ac.id/index.php/JAIC
Shahzad, K., Mardare, A. I., & Hassel, A. W. (2024). Accelerating materials discovery: combinatorial synthesis, high-throughput characterization, and computational advances. Science and Technology of Advanced Materials: Methods, 4(1). https://doi.org/10.1080/27660400.2023.2292486
Sivakumar, M., Parthasarathy, S., & Padmapriya, T. (2024). Trade-off between training and testing ratio in machine learning for medical image processing. PeerJ Computer Science, 10. https://doi.org/10.7717/PEERJ-CS.2245
Ulfa, U., Sujacka Retno, & Safwandi. (2025). Comparing Simple Exponential Smoothing And Advanced Time Series Forecasting For Cement Stock Prediction At PT. Solusi Bangun Andalas. Rabit : Jurnal Teknologi Dan Sistem Informasi Univrab, 10(2), 1200–1211. https://doi.org/10.36341/rabit.v10i2.6483
Valdebenito, G., Gonzaléz-Carvajal, M., Santibañez, L., & Cancino, P. (2022). Metal-Organic Frameworks (MOFs) and Materials Derived from MOFs as Catalysts for the Development of Green Processes. In Catalysts (Vol. 12, Issue 2). MDPI. https://doi.org/10.3390/catal12020136
Willa Dhany, H., & Izhari, F. (2023). Journal of Intelligent Decision Support System (IDSS) Exploratory Data Analysis (EDA) methods for healthcare classification. In Journal of Intelligent Decision Support System (IDSS) (Vol. 6, Issue 4).
Xu, Y., & Goodacre, R. (2018). On Splitting Training and Validation Set: A Comparative Study of Cross-Validation, Bootstrap and Systematic Sampling for Estimating the Generalization Performance of Supervised Learning. Journal of Analysis and Testing, 2(3), 249–262. https://doi.org/10.1007/s41664-018-0068-2
Zahira, N. P., & Fadillah, D. P. (2022). Pemerintah Indonesia Menuju Target Net Zero Emission (NZE) Tahun 2060 Dengan Variable Renewable Energy (VRE) Di Indonesia. In JIS: Jurnal Ilmu Sosial (Vol. 2, Issue 2).
License
Copyright (c) 2026 Muhammad Diva Irnanda, Harun Al Azies, Muhamad Akrom, Ananta Surya Pratama, Taufiqul Umam

This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Authors who publish with Jurnal Pendidikan Fisika dan Teknologi (JPFT) agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License 4.0 International License (CC-BY-SA License). This license allows authors to use all articles, data sets, graphics, and appendices in data mining applications, search engines, web sites, blogs, and other platforms by providing an appropriate reference. The journal allows the author(s) to hold the copyright without restrictions and will retain publishing rights without restrictions.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in Jurnal Pendidikan Fisika dan Teknologi (JPFT).
- Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).

